This site is devoted to my interest in mathematical biology, especially phylogenetic analysis and macroevolution.
I worked at the Centre for Theoretical Biology in Gothenburg in 2011 and 2012. This was on phylogenetic methods for dealing with allopolyploids.
Dissect in BEAST (compiled Java classes for development version of BEAST)
Working notes up to 2010.
Working notes 2011. Allopolyploids.
Working notes 2012. Allopolyploids.
Working notes 2013. Allopolyploids, species delimitation.
Calculations for multi-type age-dependent binary branching processes, Journal of Mathematical Biology, DOI: 10.1007/s00285-010-0362-8. Download PDF. The original publication is available at www.springerlink.com. Link.
Tree Models for Macro-Evolution and Phylogenetic Analysis. Systematic Biology 2011; doi: 10.1093/sysbio/syr086 Download pre-review version, Feb 2009.
Statistical Inference of Allopolyploid Species Networks in the Presence of Incomplete Lineage Sorting. Systematic Biology 2013; doi: 10.1093/sysbio/syt012. Download pre-review version, Aug 2012. It is also at arXiv.
On the reliability of Bayesian posterior clade probabilities in phylogenetic analysis (Jan 2008). Download PDF. It is also at Nature Precedings
My other web site, with my artwork, is at at www.gjones.name.
See http://www.durness.org for information about the area I live in.