This site is devoted to my interest in bioinformatics, especially phylogenetic analysis and macroevolution.
In April 2011 I started work at the Centre for Theoretical Biology in Gothenburg. I will be working on phylogenetic methods for dealing with allopolyploids.
Calculations for multi-type age-dependent binary branching processes, Journal of Mathematical Biology, DOI: 10.1007/s00285-010-0362-8. Download PDF. The original publication is available at www.springerlink.com. Link.
Tree Models for Macro-Evolution and Phylogenetic Analysis. Download pre-review version, Feb 2009. Systematic Biology 2011; doi: 10.1093/sysbio/syr086.
On the reliability of Bayesian posterior clade probabilities in phylogenetic analysis (Jan 2008). Download PDF. It is also at Nature Precedings
Here is a note which calculates a density for node times in a birth-death-sampling model.
Here is a note about distributions for rate matrix priors for substitution models for nucleotides. It shows how the full 12-parameter model, the GTR model, HKY model, and Kimura's model can be viewed as nested vector spaces in log-rate space.
My other web site, with my artwork, is at at www.gjones.name.
Email: 
See http://www.durness.org for information about the area I live in.